
Looking at my own department, there are about 10 Ph.D.'s from a similar cohort and four of them have academic positions in 2008.
[Hat Tip: Chance and Necsssity]
[Hat Tip: Chance and Necsssity]
Institutions may wish to implement more formal vetting mechanisms, however, such as periodic review by institutional moderators or peer review by official committees of blog-literate individuals, established scientists, and bloggers. Institutions might use one of a variety of mechanisms to confer a visible token of this review—such as a “blog badge”—in order to both reward quality bloggers and help readers identify trusted blogs. A blog badge is simply a small picture or icon that is prominently featured on the blog and represents an award or achievement. Such badges are usually given as awards (such as the “Weblog Awards” or the “MedBlog Awards”), and are awarded to particular outstanding blogs in a variety of categories, such as “Best Group Blog,” “Most Informative,” and “Best Translation of Published Research.” Traditional blogging awards are conferred by a committee who invites submissions until a deadline, reviews them, and then posts the winners on their Web site. The winners can then download the badge to post on their blog. Institutions might find it useful, and bloggers might find it motivating, if institutional blog badges were conferred for particularly insightful posts or as a token for passing their test or review periods. Accumulating these badges would be a public and official way for the institution to reward and validate the blogger, while conferring authority to the blog by letting readers know it has met the criterion for institutional peer review.I think this may be missing the point of blogs. Their value is based on the fact that there's no "institutional" control or monitoring. There is no peer review. This is the internet and it's free-wheeling and opinionated. I don't know of an "institution" that can officially attach its name to those kind of blogs—although they must tolerate them in the name of academic freedom. (Besides, if we use science press releases as our criterion for judging institutional accuracy, then institutional blog badges aren't going to be worth very much.)
[Hat Tip: John Dennehy]
1. This is a reference to a famous quip by J.B.S. Haldane. When asked to name the most important thing he has learned about God from studying biology he reportedy said, "I'm not sure, but He seems to be inordinately fond of beetles."
[Photo Credit: Iowa State University Plant Disease]
An equinox in astronomy is the moment in time (not a whole day) when the centre of the Sun can be observed to be directly above the Earth's equator, occurring around March 20 and September 23 each year.
More technically, at an equinox, the Sun is at one of two opposite points on the celestial sphere where the celestial equator (i.e., declination 0) and ecliptic intersect. These points of intersection are called equinoctial points—the vernal point and the autumnal point. By extension, the term equinox may be used to denote an equinoctial point.
[Image Credit: eSky]
Virginia,
Your little friends are wrong. They have been affected by the skepticism of a skeptical age. They do not believe except they see. They think that nothing can be which is not comprehensible by their little minds. All minds, Virginia, whether they be men’s or children’s, are little. In this great universe of ours, man is a mere insect, an ant, in his intellect as compared with the boundless world about him, as measured by the intelligence capable of grasping the whole of truth and knowledge. Yes, Virginia, there is a Santa Claus. He exists as certainly as love and generosity and devotion exist, and you know that they abound and give to your life its highest beauty and joy. Alas! how dreary would be the world if there were no Santa Claus! It would be as dreary as if there were no Virginias. There would be no childlike faith then, no poetry, no romance to make tolerable this existence. We should have no enjoyment, except in sense and sight. The eternal light with which childhood fills the world would be extinguished. Not believe in Santa Claus! You might as well not believe in fairies. You might get your papa to hire men to watch in all the chimneys on Christmas eve to catch Santa Claus, but even if you did not see Santa Claus coming down, what would that prove? Nobody sees Santa Claus, but that is no sign that there is no Santa Claus. The most real things in the world are those that neither children nor men can see. Did you ever see fairies dancing on the lawn? Of course not, but that’s no proof that they are not there. Nobody can conceive or imagine all the wonders there are unseen and unseeable in the world. You tear apart the baby’s rattle and see what makes the noise inside, but there is a veil covering the unseen world which not the strongest man, nor even the united strength of all the strongest men that ever lived could tear apart. Only faith, poetry, love, romance, can push aside that curtain and view and picture the supernal beauty and glory beyond. Is it all real? Ah, Virginia, in all this world there is nothing else real and abiding. No Santa Claus! Thank God! he lives and lives forever. A thousand years from now, Virginia, nay 10 times 10,000 years from now, he will continue to make glad the heart of childhood.
Alvin Plantinga defines "fideism" as "the exclusive or basic reliance upon faith alone, accompanied by a consequent disparagement of reason and utilized especially in the pursuit of philosophical or religious truth." The fideist therefore "urges reliance on faith rather than reason, in matters philosophical and religious," and therefore may go on to disparage the claims of reason.[3] The fideist seeks truth, above all: and affirms that reason cannot achieve certain kinds of truth, which must instead be accepted only by faith.[4] Plantinga's definition might be revised to say that what the fideist objects to is not so much "reason" per se — it seems excessive to call Blaise Pascal anti-rational — but evidentialism: the notion that no belief should be held unless it is supported by evidence.I wonder if this belief is widespread? I always thought that Christians wanted their religious beliefs to be rational and certainly the Intelligent Design Creationists are among those who think that God's existence has been demonstrated.
The fideist notes that religions that are founded on revelation call their faithful to believe in a transcendent deity even if believers cannot fully understand the object of their faith. Some fideists also contend that human rational faculties are themselves untrustworthy, because the entire human nature has been corrupted by sin, and as such the conclusions reached by human reason are therefore untrustworthy: the truths affirmed by divine revelation must be believed even if they find no support in human reason. Fideism, of a sort which has been called naive fideism, is frequently found in response to anti-religious arguments; the fideist resolves to hold to what has been revealed as true in his faith, in the face of contrary lines of reasoning.
Specifically, fideism teaches that rational or scientific arguments for the existence of God are fallacious and irrelevant, and have nothing to do with the truth of Christian theology.
[Hat Tip: Friendly Atheist]
OBAMA The problem is we can’t appear angry. Bush called us the angry left. Did you see anyone in Denver who was angry?Whoa! That doesn't sound like bipartisanship to me!
BARTLET Well ... let me think. ...We went to war against the wrong country, Osama bin Laden just celebrated his seventh anniversary of not being caught either dead or alive, my family’s less safe than it was eight years ago, we’ve lost trillions of dollars, millions of jobs, thousands of lives and we lost an entire city due to bad weather. So, you know ... I’m a little angry.
OBAMA What would you do?
BARTLET GET ANGRIER! Call them liars, because that’s what they are. Sarah Palin didn’t say “thanks but no thanks” to the Bridge to Nowhere. She just said “Thanks.” You were raised by a single mother on food stamps — where does a guy with eight houses who was legacied into Annapolis get off calling you an elitist? And by the way, if you do nothing else, take that word back. Elite is a good word, it means well above average. I’d ask them what their problem is with excellence. While you’re at it, I want the word “patriot” back. McCain can say that the transcendent issue of our time is the spread of Islamic fanaticism or he can choose a running mate who doesn’t know the Bush doctrine from the Monroe Doctrine, but he can’t do both at the same time and call it patriotic. They have to lie — the truth isn’t their friend right now. Get angry. Mock them mercilessly; they’ve earned it. McCain decried agents of intolerance, then chose a running mate who had to ask if she was allowed to ban books from a public library. It’s not bad enough she thinks the planet Earth was created in six days 6,000 years ago complete with a man, a woman and a talking snake, she wants schools to teach the rest of our kids to deny geology, anthropology, archaeology and common sense too? It’s not bad enough she’s forcing her own daughter into a loveless marriage to a teenage hood, she wants the rest of us to guide our daughters in that direction too? It’s not enough that a woman shouldn’t have the right to choose, it should be the law of the land that she has to carry and deliver her rapist’s baby too? I don’t know whether or not Governor Palin has the tenacity of a pit bull, but I know for sure she’s got the qualifications of one. And you’re worried about seeming angry? You could eat their lunch, make them cry and tell their mamas about it and God himself would call it restrained. There are times when you are simply required to be impolite. There are times when condescension is called for!
OBAMA Good to get that off your chest?Gee, I almost forgot about the lapel pins. It's how you demonstrate that you've sold out to the framers.
BARTLET Am I keeping you from something?
OBAMA Well, it’s not as if I didn’t know all of that and it took you like 20 minutes to say.
BARTLET I know, I have a problem, but admitting it is the first step.
OBAMA What’s the second step?
BARTLET I don’t care.
OBAMA So what about hope? Chuck it for outrage and put-downs?
BARTLET No. You’re elite, you can do both. Four weeks ago you had the best week of your campaign, followed — granted, inexplicably — by the worst week of your campaign. And you’re still in a statistical dead heat. You’re a 47-year-old black man with a foreign-sounding name who went to Harvard and thinks devotion to your country and lapel pins aren’t the same thing and you’re in a statistical tie with a war hero and a Cinemax heroine. To these aged eyes, Senator, that’s what progress looks like. You guys got four debates. Get out of my house and go back to work.
1. And, in Canada, Stéphane Dion really is a whole lot smarter than Stephan Harper or Jack Layton?
[Big Hat Tip to Chance and Necsssity]
The congresscritter in question being Sherwood Boehlert, who represented New York's 24th Congressional district (1983-2007), and chaired the House Science Committee (2001-2007). Boehlert offers this advice in a video called "Speaking for Science: Bringing Your Message to Policymakers," available for download from the American Chemical Society website.*As you might guess, the effective way to talk to a politician about science is to be brief and to the point and avoid all that sciency stuff that only confuses everyone. You need to stop trying to explain science to the staff member and concentrate on what's in it for the politician.
The video presents two scenarios in which a group of scientists meets with their Congressional representative (who happens to be a member of the House Science Committee, played by Boehlert). As you might guess, the idea is to contrast the effective meeting with the disastrous one.
Biologists involved in the Human Genome Project were frankly astonished to discover that everything that makes us human is the product of a set of only 23,000 or so genes.1 That number in itself, though several times smaller than prior estimates, is not shocking; it is the relative size of other genomes that surprised scientists.This is one version of what I call The Deflated Ego Problem. The "problem" is that some people are really, really, upset about the fact that humans may only have a few thousand genes more than a fruit fly.
The common fruit fly that hovers over your ripening bananas, for instance, possesses some 14,000 genes. It's perfectly obvious that human beings are vastly more complex, biologically, than a fly. Molecular biologists have demonstrated in recent years that it is not the number of genes that is the key to complexity but rather the number and diversity of gene products that a given set of genes can instruct cells to manufacture.
Rather than a single gene ordering the production of a single kind of protein, as scientists used to assume, it turns out that individual genes can in some cases give rise to dozens or even thousands of different proteins, thanks to a phenomenon called alternative splicing.
Some people were surprised and embarrassed by the "low" number of genes in the human genome but others were pretty happy that their estimates were close to the mark [Facts and Myths Concerning the Historical Estimates of the Number of Genes in the Human Genome].
Leaving aside the troublesome adjective, what is the modernism that the Altenburg meeting is meant to move beyond — or to use Pigliucci's preferred term, 'extend'1? Between about 1920 and 1940, researchers such as the American Sewall Wright and the Englishmen Ronald Fisher and J. B. S. Haldane took Charles Darwin's ideas about natural selection and Gregor Mendel's insights into how traits pass from parents to offspring — which many biologists of the time believed antithetical — and fused them into a mathematical description of the genetic makeup of populations and how it changes. That fusion was the modern synthesis. It treats an organism's form, or phenotype, as a readout of its hereditary information, or genotype. Change is explained as one version of a gene being replaced by another. Natural selection acts by changing the frequency of genes in the next generation according to the fitness of phenotypes in this one. In this world view, the gene is a black box, its relationship to phenotype is a one-way street, and the environment, both cellular and external, is a selective filter imposed on the readout of the genes, rather than something that can influence an organism's form directly.This is a view of evolution that doesn't recognize random genetic drift as an important mechanism of evolution. Surely in 2008, a publication like Nature shouldn't be publishing the old-fashioned adaptationist view of evolution? What's wrong with adding one sentence to say that Sewall Wright also took an idea that Charles Darwin never heard of, random genetic drift, and incorporated that idea into our modern understanding of evolution so that we now recognize that random genetic drift is one of the main mechanisms of evolution?
The Reverend Michael Reiss, the Royal Society's Director of Education, is in trouble because of his views on the teaching of creationism.I agree with Dawkins that the position taken by Michael Reiss was not "obviously silly." In fact I think it was a really good idea.
Although I disagree with him, what he actually said at the British Association is not obviously silly like creationism itself, nor is it a self-evidently inappropriate stance for the Royal Society to take.
Scientists divide into two camps over this issue: the accommodationists, who 'respect' creationists while disagreeing with them; and the rest of us, who see no reason to respect ignorance or stupidity.
The accommodationists include such godless luminaries as Eugenie Scott, whose National Center for Science Education is doing splendid work in fighting the creationist wingnuts in America. She and her fellow accommodationists bend over backwards to woo the relatively sensible minority among Christians, who accept evolution.
Get the bishops and theologians on the side of science – so the argument runs – and they'll be valuable allies against the naive creationists (who probably include the majority of Christians and certainly almost all Muslims, by the way).
No politician could deny at least the superficial plausibility of this expedient, although it is disappointing how ineffective as allies the 'sensible' minority of Christians turn out to be.
The official line of the US National Academy, the American equivalent of the Royal Society, is shamelessly accommodationist. They repeatedly plug the mantra that there is 'no conflict' between evolution and religion. Michael Reiss could argue that he is simply following the standard accommodationist line, and therefore doesn't deserve the censure now being heaped upon him.
Unfortunately for him as a would-be spokesman for the Royal Society, Michael Reiss is also an ordained minister. To call for his resignation on those grounds, as several Nobel-prize-winning Fellows are now doing, comes a little too close to a witch-hunt for my squeamish taste.
Nevertheless – it's regrettable but true – the fact that he is a priest undermines him as an effective spokesman for accommodationism: "Well, he would say that, wouldn't he!"
If the Royal Society wanted to attack creationism with all fists flying, as I would hope, an ordained priest might make a politically effective spokesman, however much we might deplore his inconsistency.
This is the role that Kenneth Miller, not a priest but a devout Christian, plays in America, where he is arguably creationism's most formidable critic. But if the Society really wants to promote the accommodationist line, a clergyman is the very last advocate they should choose.
Perhaps I was a little uncharitable to liken the appointment of a vicar as the Royal Society's Education Director to a Monty Python sketch. Nevertheless, thoughts of Trojan Horses are now disturbing many Fellows, already concerned as they are by the signals the Society recently sent out through its flirtation with the infamous Templeton Foundation.
Accommodationism is playing politics, while teetering on the brink of scientific dishonesty. I'd rather not play that kind of politics at all but, if the Royal Society is going to go down that devious road, they should at least be shrewd about it. Perhaps, rather than resign his job with the Royal Society, Professor Reiss might consider resigning his Orders?
When asked if religion should be removed from science courses, Ayala gave a surprising answer.Franscisco Ayala is not only a good biologist, he's also
“Religion is not science, but the fact that science is compatible with religion is an important thing to state in science classes,” Ayala said.
1. John Wilkins addresses this same letter and weighs in against the "accommodationist" charge. Unfortunately, his posting [Dawkins on the nose again] isn't as good as most of what John writes. I'll give him the benefit of the doubt and assume he was under the weather when he wrote it.
Welcome to the #114th edition of the Tangled Bank, a carnival of science bloggers where you’re guaranteed to learn something new and exciting. We’ll start in the classroom, the “traditional” place for learning, ....
Send an email message to host@tangledbank.net if you want to submit an article to Tangled Bank. Be sure to include the words "Tangled Bank" in the subject line. Remember that this carnival only accepts one submission per week from each blogger.
"for his discovery of the nature and mode of action of the respiratory enzyme"
Definite proof that he was on the track of this well-hidden secret of Nature was obtained by the use of exact measurements of combustion in living cells or, as Warburg calls it, cell respiration. The quantitatively measured variations in the process of combustion under different conditions threw light on the nature of the respiratory ferment. Its tendency to enter into compounds with substances which combine with iron showed that it is itself an iron compound, and that its effects are due to iron.We now know that this is incorrect. Warburg probably worked with cytochrome c which has a iron-containing heme group [Monday's Molecule #88] but cytochrome c does not bind oxygen. It is an intermediate in the oxidation-reduction pathway, contributing electrons to cytochrome c oxidase—the real oxygen binding enzyme. Cytochrome c oxidase does have an iron heme group that contributes to oxygen binding but copper atoms are also intimately involved.
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Goodrich,J.A., Cutler,G., and Tjian,R. (1996) Contacts in context: promoter specificity and macromolecular interactions in transcription. Cell 84, 825-830.
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Ossipow,V., Tassan,J.P., Nigg,E.A., and Schibler,U. (1995) A mammalian RNA polymerase II holoenzyme containing all components required for promoter-specific transcription initiation. Cell 83, 137-146.
Pan,G., Aso,T., and Greenblatt,J. (1997) Interaction of elongation factors TFIIS and elongin A with a human RNA polymerase II holoenzyme capable of promoter-specific initiation and responsive to transcriptional activators. J. Biol. Chem. 272, 24563-24571.
Ricchetti,M., Metzger,W., and Heumann,H. (1988) One-Dimensional Diffusion of Escherichia-Coli Dna-Dependent Rna-Polymerase - A Mechanism to Facilitate Promoter Location. Proceedings of the National Academy of Sciences of the United States of America 85, 4610-4614.
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von Hippel,P.H. (2007) From "simple" DNA-protein interactions to the macromolecular machines of gene expression. Annual Review of Biophysics and Biomolecular Structure 36, 79-105.
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Another pursuit that interests him, one of high promise for reconstructing human evolutionary history, is that of discovering which genes bear the mark of recent natural selection. When a new version of a gene becomes more common, it leaves a pattern of changes that geneticists can detect with various statistical tests. Many of these selected genes reflect new diets or defenses against disease or adaptations to new climates. But they tend to differ from one race to another because each human population, after the dispersal from Africa some 50,000 years ago, has had to adapt to different circumstances.John Hawks is an expert in these kinds of studies so it's interesting to read his comments. Note that there's no disagreement over the facts; races are genetically different. I disagree with Hawks and Goldstein on the cause of some of this variation. In my opinion they are placing too much emphasis on selection as the cause of variation between species and not enough emphasis on chance. Differences in ABO blood type frequencies, for example, are probably not due to selection.
This newish finding has raised fears that other, more significant differences might emerge among races, spurring a resurrection of racist doctrines. “There is a part of the scientific community which is trying to make this work off limits, and that I think is hugely counterproductive,” Dr. Goldstein said.
The chief reasons why so many people are loath to admit the genetic variability of socially and culturally significant traits are two. First, human equality is stubbornly confused with identity, and diversity with inequality, as though to be entitled to an equality of opportunity, people would have to be identical twins. Human diversity is not incompatible with equality. Secondly, it is futile to look for one-to-one correspondence between cultural forms and genetic traits. Cultural forms are not determined by genes, but their emergence and maintenance are made possible by the genetically conditioned human diversityLet me sound a note of caution to those who wish to comment. The fact that humans races might be genetically different says absolutely nothing at all about equality and racism. For this thread only, I will delete any comments where the author is confused about this distinction. This is a discussion about science and whether some scientific investigations should be censored because they might be misinterpreted.
[Image Credit: The image is obviously the cover of Scientific American from December 2003. This is one of the most blatant examples of political correctness ever published in a prestigious journal and it's one more example of the decline of Scientific American. It doesn't take much to recognize that the faces on the cover are identical except for skin color. As if that's all there is to human populations.]
1. The specific binding sites are called operators. There are actually three different operator sequences to which lac repressor can bind but that doesn't make much different for the point I trying to make.
The issue of creationism in class is a difficult one. Critics such as Kroto, Roberts and Dawkins are understandably wary of religious ideas being allowed anywhere near school science labs, especially at a time when creationist organisations and proponents of Intelligent Design are stepping up efforts to shoehorn their ideas into science curricula. But if we take Reiss at his word (and if you read the blog posted on the Guardian last week, it's clear he wasn't suggesting creationism should be taught), then wasn't he just pointing out that the classroom should be a forum for free and open debate, and teachers must be ready to enter discussion with their pupils, and put them right when the views they bring from home clearly contradict the overwhelming evidence for evolution? Isn't this part of the aim of education?PZ Myers has weighed in against Reiss [Michael Reiss's big mistake]. According to PZ ...
Michael Reiss, the director of education, is pushing this idea with a noble and reasonable intent: he thinks it is the only way to reach some students who will shut off learning if their religious biases are challenged. Unfortunately, he's also suggesting that non-science/anti-science concepts should be specified as a course objective in science classes, he's buying into common creationist propaganda ploy, and he's asking for unwarranted deference for wrong ideas held for unscientific reasons by students. He argues for respecting misplaced concerns.I don't agree with PZ. I think he misunderstands what Michael Reiss is advocating and, furthermore, I think he's projecting an American perspective on to teaching in the UK.
[Hat Tip: John Wilkins, who doesn't find it funny because he's a reductionist mechanist and an adaptationist.]
Welcome to the September 14, 2008 edition of Gene Genie! Bloggers have begun to pick up posting with the end of summer, and it seems like everyday there’s a bunch of new interesting posts about the human genome.The beautiful logo was created by Ricardo at My Biotech Life.