
This is Psittacanthus sp. or parrot-flower mistletoe from Botany Photo of the Day [August 08, 2007 : Psittacanthus sp.].
The plant normally grows as a parasite on conifers.
Transcription — the transfer of DNA’s genetic information through the synthesis of complementary molecules of messenger RNA — forms the basis of all cellular activities. Yet little is known about the dynamics of the process — how efficient it is or how long it takes. Now, researchers at the Albert Einstein College of Medicine of Yeshiva University have measured the stages of transcription in real time. Their unexpected and surprising findings have fundamentally changed the way transcription is understood.Actually, a great deal is known about the dynamics of transcription including how efficient it is and how long it takes. There's nothing in the paper that's particularly unexpected or surprising. The results do not fundamentally change the way transcription is understood.
An excess of high-frequency derived SNPs is often interpreted as a result of genetic hitchhiking during recent selective sweeps [26]. Because the site-frequency spectrum in rice varieties is observed from randomly selected loci, and the loci contributing high frequency derived SNPs are distributed across the genome (Fig. S4), this pattern suggests that strong linkage to positively selected mutations occurred within most of the genome. However, demographic forces may have also played a role in shaping the rice genomes. We developed several demographic models and a multiple selective sweeps model to test which evolutionary processes may best explain the observed patterns of polymorphism in rice.In addition to a selective sweep model, the authors tested a neutral population bottleneck model defined as,
The most widely accepted demographic model for crop domestication is a neutral bottleneck model [27-29]. In this model, rice domestication is assumed to be a result of recent population divergence, with one of the two daughter populations experiencing a reduction in population size at divergence associated with the founder effect at the time of domestication, followed by population growth as cultivation of the crop increases.The other models were combinations of bottleneck and migration between populations, and bottleneck plus selection.
A more complex demographic scenario involving very strong bottlenecks that led to the fixation of alternate alleles during the two rice domestication events (with concurrent gene flow between variety groups) can explain the site-frequency spectrum of indica and O. rufipogon. However, this pure demography model requires a bottleneck four-fold stronger in indica and twice as strong in tropical japonica relative to the model that incorporates selection (Table 2; Figure 5), and a relatively high migration rate between domesticated rice and wild O. rufipogon populations. It is also important to note that the model is a poor fit to the observed frequency distribution of alleles in tropical japonica.The lesson here is that it is very difficult to distinguish selection from drift and one should be cautious in attributing results to only one of these mechanisms of evolution.
Domestication, however, is characterized by strong directional selection on a suite of traits that lead to the establishment of cultivated species as distinct entities from their wild progenitors within agricultural settings. We show that, in contrast to the complex demographic model, a simple bottleneck with sweeps model fits data from both tropical japonica and indica well without requiring an extremely strong domestication bottleneck. Since domesticated Asian rice has been subject to artificial selection, the selection plus demography model is a very plausible explanation for the observed strong excess of high frequency derived alleles in domesticated rice varieties, and is consistent with recent reports about domestication genes in rice [45,46].
Caicedo, A., Williamson, S., Hernandez, R.D., Boyko, A., Fledel-Alon, A., et al. (2007) Genome-Wide Patterns of Nucleotide Polymorphism in Domesticated Rice. PLoS Genet. In press. [doi:10.1371/journal.pgen.0030163.eor]
It's extremely uncommon for me to find myself in agreement with Denyse on anything (and it's not a comfortable feeling), but in this case I do think she's got a good point. Creationism is certainly explicitly based on the Bible, and Intelligent Design certainly is not.There are several different ways of defining "creationism." I prefer the definition that refers to "creationists" as people who believe that the universe was created by God. In some cases God just set up the original universe with all its laws of physics and chemistry, while in other versions of creationism he/she did some meddling after the initial creation event.
Creationism is the belief that humanity, life, the Earth, and the universe were created in their entirety by a deity or deities (typically God), whose existence is presupposed.[1] In relation to the creation-evolution controversy the term creationism (or strict creationism) is commonly used to refer to rejection of evolution. The wide spectrum of such beliefs includes young Earth creationism holding a very literal interpretation of Genesis, while old Earth creationism accepts geological findings but rejects evolution. The term theistic evolution has been coined to refer to beliefs in creation which are compatible with scientific findings on evolution and the age of the Earth.
Shift the Burden of Proof Onto Your OpponentHere's a classic example of this tactic in an interview of Alister McGrath on the National Catholic Register website [All’s Not Quiet on The Atheistic Front]. McGrath says,
Make all kinds of unsubstantiated statements and claims, and when your opponent objects and challenges those statements, say, "Do some research on the subject and you will see that what I am saying is true."
It is the job of the person who is making the statements and claims to do the research and supply the evidence to support his assertions.
A second point, which clearly follows on from this, is that Dawkins clearly believes that those who believe in God must prove their case and atheists have nothing to prove because that’s their default position. But I think that’s simply incorrect and it’s obviously incorrect.This is a totally fallacious argument and it's surprising to see it coming from an Oxford Professor. However, I had a chance to hear McGrath speak in May and I can assure you that he really is this ignorant [Alister McGrath].
Really, the only obvious position is to say: We don’t know, we need to be persuaded one way or the other. The default position in other words is: not being sure.
Therefore I think Dawkins must realize that he’s under as great an obligation to show that there is no God as, for example, a Christian is to show that there’s a God. Those are two very fundamental problems I have with his approach before we go any further.
... as someone who has studied the history of science, I am very much aware that what scientists believe to be true in the past has been shown to be wrong or has been overtaken by subsequent theoretical developments.According to this line of argument, no scientific concepts could ever be used to support any kind of argument because all science is transient. Yes, this is a form of Reductio Ad Absurdum but not all of these are wrong. If McGrath wants to argue that only some scientific concepts fall into the category of "transient" then he should have made it clear that he was dealing with a subset of what science believes. I'm willing to bet that he isn't as skeptical about everything scientific. Maybe it's McGrath who is committing the error of reductio ad absurdum?
One of my concerns is that Dawkins seems very, very reluctant to concede radical theory-change in science. In other words, this is what scientists believe today but we realize that tomorrow they might think something quite different. He seems to think that science has got everything forced out and that’s it, whereas my point is that as we progress we often find ourselves abandoning earlier positions.
So my question, therefore, is: How on earth can Dawkins base his atheism on science when science itself so to speak is in motion, in transit?
What I do think is enormously important is to mount a public defense of the Christian faith that shows it as reasonable, attractive and plausible. That really is something that needs to be done, and that’s why I wish we had more people like G.K. Chesterton, C.S. Lewis or J.R.R. Tolkien, who spoke so powerfully in the past. I think there’s a real need for the Church to regain its apologetic dimension and to be really able to speak with confidence and conviction about faith in the public domain.So far I've read books by Bill Dembski, Phillip Johnson, Jonathan Wells, Michael Behe, Michael Denton, Francis Collins, Ken Miller, and Simon Conway-Morris. I've also read four or five articles by Allister McGrath. All of them are Christians and all of them have tried to show me that their religion is "reasonable, attractive, and plausible." If that's the best they can do then Christianity is in big trouble.
Observational SelectionHere's an example of this technique from the CNNMoney.com website [A Turn For The Better In Iraq?]. In this case, the author picked out a single article from The New York Times written by Brookings Institution scholars Michael O'Hanlon and Kenneth Pollack [A War We Just Might Win]. Those scholars pointed out that some progress was being made in Iraq in stabilizing the country. The significance of the New York TImes piece is that O'Hanlon and Pollack have been, and continue to be, critical of the Bush policies in Iraq. The other significance is that some editor selected a misleading title for their article, "A War We Just Might Win." The authors have appeared on television to criticize that choice of title as misleading.
Observational selection, also known as "cherry-picking", is a tactic like counting the hits and forgetting the misses. See only what you wish to see. Overlook and ignore evidence you don't wish to see. And encourage your audience to be equally blind. Observational selection will destroy the validity of any statistical study.
Here is the most important thing Americans need to understand: We are finally getting somewhere in Iraq, at least in military terms. As two analysts who have harshly criticized the Bush administration’s miserable handling of Iraq, we were surprised by the gains we saw and the potential to produce not necessarily “victory” but a sustainable stability that both we and the Iraqis could live with.The author of the CNNMoney.com article cherry-picked from this opinion piece and published the following under the title "A Turn For The Better In Iraq?"
War In Iraq: It's quite likely that, as you read this, U.S. troops under the leadership of Gen. David Petraeus are winning the war against terrorism in Iraq. And no, it isn't just war-crazed neocons who think so.Notice that this particular article by Brookings Institute scholars is "thoughtful." I wonder how many other articles from the Brookings Institute are "thoughtful." Perhaps all of them? I doubt it.
The possibility that the U.S. is winning this war -- and not losing, as Democrats would have it -- was raised in the pages of no less than the New York Times just this week.
In a long, thoughtful op-ed following an eight-day trip to Iraq, Brookings Institution scholars Michael O'Hanlon and Kenneth Pollack wrote about the progress there -- and what's at stake.
Remember: Brookings generally is a liberal -- not conservative -- think tank, though neither O'Hanlon nor Pollack is in any sense a doctrinaire leftist. That said, the two have been to Iraq before and are no great fans of President Bush. But the changes they saw this time were, in their words, "significant."
In the end, the situation in Iraq remains grave. In particular, we still face huge hurdles on the political front. Iraqi politicians of all stripes continue to dawdle and maneuver for position against one another when major steps towards reconciliation — or at least accommodation — are needed. This cannot continue indefinitely. Otherwise, once we begin to downsize, important communities may not feel committed to the status quo, and Iraqi security forces may splinter along ethnic and religious lines.That doesn't sound like "winning" to me. What happened was that someone who is likely to be a supporter of the war on terrorism picked out a single article by two Bush critics and used it as evidence that "liberals" are now seeing the light and have come 'round to supporting the war on terrorism.
How much longer should American troops keep fighting and dying to build a new Iraq while Iraqi leaders fail to do their part? And how much longer can we wear down our forces in this mission? These haunting questions underscore the reality that the surge cannot go on forever. But there is enough good happening on the battlefields of Iraq today that Congress should plan on sustaining the effort at least into 2008.
Appeal To StupidityThe IDiots are really, really good at this kind of trick although, in fairness, it may not be a debating trick in their case. Maybe they really are stupid.
Flaunt an anti-intellectual attitude, and belittle knowledge, wisdom, intelligence and education.
This technique is closely related to "Common Folks" -- "There ain't nobody here but us stupid common folks. I'm just a regular ignorant Joe, just another man of the people."
I still insist you don’t need to know any biology at all to have predicted your main conclusions, all you need to know is the second law of thermodynamics: natural forces don’t build bridges, they just destroy them*. But no one will listen to you unless you do know some biology, so I’m glad there are people like you who look at the details and arrive at the same obvious conclusions.Hmmm, I wonder why nobody will listen to you just because you don't know anything about biology?
Progress in the battle between Darwinism and ID is judged, by both sides, by who has the most Nobel prize winners and National Academy of Science members (they do!), but for me the whole issue has always been extremely simple. It’s not too complicated for the layman to understand, it’s too simple for the scientist.Yes siree Bob! Them smart scientists are just too smart for their own good. You have to be a regular ignorant Joe to appreciate why Darwinism is wrong and the IDiots are right. A classic appeal to stupidity.